PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00572g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 430aa    MW: 46604.6 Da    PI: 8.3416
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00572g00008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.1e-093760427
                              ---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                              + C+f+ rtG C yG++C++ H+p
  Peaxi162Scf00572g00008.1 37 PVCSFYIRTGSCGYGAKCRYTHPP 60
                              78********************96 PP

2zf-CCCH38.42.1e-1281105327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C++++rtGtCk+G++CkF+H++
  Peaxi162Scf00572g00008.1  81 EPTCQYYLRTGTCKFGASCKFHHPR 105
                               689********************96 PP

3zf-CCCH37.83.1e-12125149226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                t++C+++++tG+Ck+G +CkF+H+
  Peaxi162Scf00572g00008.1 125 ATRECSYYSKTGQCKFGLTCKFNHP 149
                               599*********************9 PP

4zf-CCCH34.34e-11280306127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+++ +tG Ck+G++C+++H+p
  Peaxi162Scf00572g00008.1 280 PGQPVCQYYTKTGDCKFGSSCRYHHPP 306
                               5789*********************97 PP

5zf-CCCH34.24.1e-11326352127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +++e+C+f+++ G+Ck+G +CkF H++
  Peaxi162Scf00572g00008.1 326 PGMEPCSFYMQRGFCKFGHTCKFDHPM 352
                               689**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3713361IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-53360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-63662IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-63760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-53859IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.96278106IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-678105IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-1081105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-681106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-584105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5123150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845123151IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5123150IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9126149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4126148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.483279307IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-7279306IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6282307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5284305IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6325352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474325353IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8326352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6327353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4329350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MAGNESHSVG PETGLEESMM RLGLWDKQVY PERSGAPVCS FYIRTGSCGY GAKCRYTHPP  60
DRTSVGALQL GGSAHPERIG EPTCQYYLRT GTCKFGASCK FHHPRNGGSL SNIQLNIYGY  120
PLRPATRECS YYSKTGQCKF GLTCKFNHPY LAGLSTPAPA RPFYPTVQSL PAPPEEFNSA  180
STSFRVEKPP HLPGSYVPGA YGPFLLHPGV VTIQNWSTYS GPVSPAVSPG AQPAAGVTSI  240
YGISQLASSP AAFAAPYSPL HSATGPSSST HKEKSFPERP GQPVCQYYTK TGDCKFGSSC  300
RYHHPPDWIA SQANCTFSSL GLPLRPGMEP CSFYMQRGFC KFGHTCKFDH PMGTVQNSPS  360
AASLPDTPTA SYMLGSSFTL APTSLPEIEG SLLLFYESTF LTEQLKYSNA FRVWAFTICS  420
CQVKEVNQQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366677.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-152C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM1A3480.0M1A348_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000136470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-151C3H family protein